Feed aggregator

Bug #4214 (Active): Biblio

Scratchpads issue queue - 3 hours 16 min ago

Many of today's journal have article numbers rather than issues and pagination. For example, the follow article is article number 93, but there is no logical place to list that number for the journal article. I have been putting such numbers under pagination, but that is misleading. Would be possible to add a place for article numbers for publications of this sort listed in bibliographies?

Bug #4213 (Active): Media select view redirects to front page

Scratchpads issue queue - Fri, 2014-07-25 18:59

When using the Media select widget, I recently encountered some odd behavior. While typing in the filter box, the overlay (where the Upload, Library, My Files tabs are shown) is replaced with the front page (see attached screenshot). This was replicated at least twice by typing (in the 'File name' filter field of the 'Library' tab): "V100779". I notice that if I type slow, the autocomplete kicks in before I finish typing, and once the search is complete, my cursor is no longer in the 'File name' field. Perhaps the additional keystrokes are somehow redirecting the view? Would a non-autocomplete widget, in combination with an 'Apply' button help avoid this behavior?

This occurred on Mac OS X, using the Safari browser.

Bug #4212 (Require Feedback): Taxon import problems

Scratchpads issue queue - Fri, 2014-07-25 14:58

I have been unable to upload a taxon excel import. I keep getting the error message SQLSTATE23000: Integrity constraint violation: 1062 Duplicate entry '0' for key 'revision_id'

Bug #4211 (Active): Bibtext import

Scratchpads issue queue - Fri, 2014-07-25 13:05

I cannot upload the bibtext. I keep getting an error message saying: An AJAX HTTP error occurred. HTTP Result Code: 500 Debugging information follows. Path: /batch?render=overlay&id=107&op=do StatusText: Internal Server Error ResponseText

Bug #4210 (Active): Map support for terms with children?

Scratchpads issue queue - Wed, 2014-07-23 20:10

Is it possible on taxonomy term pages to show maps of specimens for all descendant terms of the current term? For example, if I am on the term page for a subgenus, I would like the map tab to show all the points for specimens assigned to species (and subspecies) that are in that subgenus (currently nothing is displayed in the map tab for terms with children). Another example of this would be for species terms which have no specimens assigned to them, but contain subspecies which do have specimens. On the species' term page, in the map tab, I would like all points from specimens from all descendant subspecies to show on the map.

e.g. http://bembidion.info/taxonomy/term/5419/maps
and http://bembidion.info/taxonomy/term/5843/maps

...the display could even get wacky and assign unique colors to specimens of each of the different descendant terms (but I realize that is asking a lot).

Bug #4208 (Active): Error trying to import names

Scratchpads issue queue - Wed, 2014-07-23 13:39

I have been trying to import a taxon list to a new scratchpad. Every time I do so, the import fails and I receive this message: SQLSTATE23000: Integrity constraint violation: 1062 Duplicate entry '0' for key 'revision_id'

Feature #4207 (Active): Enable assigning of roles in the user import template

Scratchpads issue queue - Wed, 2014-07-23 10:01

It is currently not possible to assign a role in the user import template. This means all users are imported without any role, which is useful for creating "People", but not very useful for creating actual users of the site, or indeed "People" that have content assigned to them.

Bug #4206 (Completed - Requires Review): Possible to submit add term form twice in taxonomy editor

Scratchpads issue queue - Tue, 2014-07-22 14:56

The cause of the duplicate GUIDs on sounds.myspecies.info.

Bug #4205 (Active): Use GUIDs and allow update from external taxonomy sources

Scratchpads issue queue - Tue, 2014-07-22 14:21

Currently when importing terms from both EoL and WoRMS no record of the external service's GUID/ID is stored, which means terms can not be refreshed/updated. In order to allow vocabularies to be updated, we need to store the external service's ID/GUID, and also to check against these values when updating.

Bug #4204 (Active): Bibtext import

Scratchpads issue queue - Tue, 2014-07-22 13:23

I have been trying to import a bibtext file and when I try I recieve an error message saying: An AJAX HTTP error occurred. HTTP Result Code: 500 Debugging information follows. Path: /batch?render=overlay&id=39&op=do StatusText: Internal Server Error ResponseText:

I have no idea what to do. This message has appeared on multiple scratchpads.

Bug #4203 (Active): Creator in image upload template does not attach to images

Scratchpads issue queue - Mon, 2014-07-21 23:24

This one concerns the Creator column in the file_importer_image template, which I had succeeded in using previously but now can't get to work. Creator names (text strings) attached successfully to image files on Nemertea.myspecies.info (upload template attached) but subsequent uploads to Peracarida.myspecies.info and EOLhotlist.myspecies.info (templates also attached) left the creator field blank.

Bug #4202 (Active): Problem in nomencalture block...

Scratchpads issue queue - Mon, 2014-07-21 16:57

Dear Team,

One visitor of my site told me that some taxa have a wrong nomemclature block displayed when visiting the site. For example, she see that for the genus Schlettereriella, the nomenclature block is this from the genus Stephanospathius. Idem for the following genera:

- Genus: Acanthodoryctes Turner, 1918
- Genus: Bohartiellus Marsh, 1983
- Genus: Mimipodoryctes Belokobylskij, 2000
- Genus: Termitobracon Brues, 1923
- Genus: Eodendrus Belokobylskij, 1998
- Genus: Parana Nixon, 1943

That is wrong...
I have checked the taxonomy and the description in the taxonomy terms and all are correct.
Moreover after this checking all the genera on the site displayed the nomemclature infos corresponding the genus Schlettereriella rather than their own informations! :-/
And is I reload the site, and check various genera, it is the nomaclature infos from the genus Acanthodoryctes that appears...
May be a problem to refresh the block with new data when changing the selected taxa?

That is very strange.
Please could you fix and check why this happens now?
All was correct few days ago.

Thank you for your help.

Feature #4201 (Active): Investigate the Tripal group of modules

Scratchpads issue queue - Mon, 2014-07-21 15:35

Investigate the Tripal modules, looking at how well they would integrate with the Scratchpads in their current state. What would need to be done to allow their use?

Bug #4200 (Active): EOL DwC-A export- some soundfiles recognized as images

Scratchpads issue queue - Fri, 2014-07-18 16:51

Sound files in this resource are in mp3. (Sound files on another Scratchpad, in .wav format, don't have this problem.)

Records in the "image" file of the DwC-A for these sound files are assigned the correct mime format (audio/mpeg) but not the correct mime type; they are http://purl.org/dc/dcmitype/StillImage instead of http://purl.org/dc/dcmitype/Sound. The files are then not recognized or playable on EOL.

Bug #4199 (Active): Taxonomic name filters in literature tab are all doubled- ghost taxa?

Scratchpads issue queue - Thu, 2014-07-17 20:01

I have one biblio record with two taxa attached as keywords, which successfully indexed to taxa on the scratchpad. Both taxa and their parent taxa appear as filters in the literature tab, but each taxon name appears twice. I did once have two classifications coexisting on this Scratchpad, in two different taxonomies, when I updated the classification. I deleted one of them, so now one classification remains. I wonder if that is the source of the repeated names. The "im_field_taxonomic_name" values seem to differ for the two names in each pair.

Bug #4198 (Active): duplicate GUIDS in sounds.myspecies.info

Scratchpads issue queue - Thu, 2014-07-17 15:42

Following items have duplicate GUIDs - can you fix them please.

"1c773955-f84b-4c1e-b55d-c368497c1600","Uromenus brevicollis","","Species","","","http://sounds.myspecies.info/node/
"1c773955-f84b-4c1e-b55d-c368497c1600","Uromenus elegans","","Species","","","http://sounds.myspecies.info/node/

"2f147bd1-35b3-4958-ae5d-9156198b67a4","Psorodonotus illyricus macedonicus","","Subspecies","","","http://sounds.myspecies.info/node/

"2f147bd1-35b3-4958-ae5d-9156198b67a4","Psorodonotus illyricus","","Species","","","http://sounds.myspecies.info/node/


"3beace99-900e-4e0c-aa33-ce369531d605","Cicadetta argentata","","Species","","","http://sounds.myspecies.info/node/

"3beace99-900e-4e0c-aa33-ce369531d605","Cicadetta sp.","","Species","","","http://sounds.myspecies.info/node/


"3d8bfdb1-2dc3-491c-823e-9c0cdec8534a","Arcyptera labiata","","Species","","","http://sounds.myspecies.info/node/

"3d8bfdb1-2dc3-491c-823e-9c0cdec8534a","Arcyptera tornosi","","Species","","","http://sounds.myspecies.info/node/


"62c53016-0bd6-42b6-988a-b7fbf8ec414d","Rhacocleis edentata","","Species","","","http://sounds.myspecies.info/node/

"62c53016-0bd6-42b6-988a-b7fbf8ec414d","Rhacocleis ferdinandi","","Species","","","http://sounds.myspecies.info/node/

"62c53016-0bd6-42b6-988a-b7fbf8ec414d","Rhacocleis neglecta","","Species","","","http://sounds.myspecies.info/node/


"9ad44208-296b-436f-a718-7f203561e098","Poecilimon joncus lobulatus","","Subspecies","","","http://sounds.myspecies.info/node/

"9ad44208-296b-436f-a718-7f203561e098","Poecilimon jonicus lobulatus","","Subspecies","","","http://sounds.myspecies.info/node/


"f456da85-f02e-4f98-a7a1-6c5576e58690","Paradrymadusa aksirayi","","Species","","","http://sounds.myspecies.info/node/

"f456da85-f02e-4f98-a7a1-6c5576e58690","Paradrymadusa sordida","","Species","","","http://sounds.myspecies.info/node/


Bug #4197 (Active): Sratchpad very slow

Scratchpads issue queue - Wed, 2014-07-16 18:04

My Scratchpads are very slow at displaying pages. This is frustrating for users and for me when I am trying to create or edit pages. I guess this is a server issue which might not be too easy to resolve quickly?

Bug #4196 (Active): Highlighting text

Scratchpads issue queue - Wed, 2014-07-16 18:02

I find it tricky to highlight text precisely (using right click and move cursor over text) in the new Scratchpad system. The old interface was not problematic. It is difficult enough to highlight if you move across text from left to right, but moving from right to left often causes unwanted text to also be highlighted.

Bug #4195 (Active): limitation of characters in Biblio/Taxon

Scratchpads issue queue - Tue, 2014-07-15 08:29

I wanted to add all taxon names included in a publication. Unfortunately, I reached the limit of characters allowed in the "Taxon" field. Is it possible to allow unlimited characters in that field so that as many taxa as wished can be associated with a certain publication?

Bug #4194 (Active): Cannot attach *.gz files

Scratchpads issue queue - Sat, 2014-07-12 06:27

If possible, please add gzip (*.gz) files to the allowable formats for attachments. I notice that *.zip files are allowed. Adding *.gz will accomodate those of us using Linix.

Thanks in advance for your help.

- Aubrey


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